CAD PTSD 
Collaboration with Robert Gibbons
Milestones
Notes
+ check ms
+ js support
Cardiac Event Prediction
Collaboration with Gaurav Upadhyay
Milestones
Notes
+ support ms
Autism Prediction 
Collaboration with Michael Msall
Milestones
Notes
+ word version
+ 3000 word version
Eating Disorder 
Collaboration with Yoav Gillad
Milestones
Notes
+ figfiles pipeline generation
+ draft preparation
+ Find dependency to outcome vraiables
Gestational Diabetes 
Collaboration with Ronald Cohen
Milestones
Notes
+ prepare figfiles
+ prepare draft
+ data request to CRI for second dataset (UCM)
+ solve UCM dataset for prediction
+ show cost abd effectiveness of intervention
Manic Episode Prediction
Collaboration with Alex De Leow
Milestones
Notes
+ prepare figfiles
+ prepare draft (use grant text)
+ Get UCM data
+ Investigate effect of individual drugs
Qnet: Epidemic+Phylogeny 
Milestones
Notes
+ run H3N2 north and south predictions
+ update cluster results to reduce prediction error for HA and NA
+ Prepare a distance calculator script for Influenza current year, SARS1 and SARS2 taht we can deploy on pypi (with precomputed qnets)
+ update figure in draft
+ update text to switch order of applications
Qnet: Pandemic
Milestones
Notes
+ diffusion analysis for
HIV (2-3 clinical phenotypes),
CCHF,
H3N2 HA NA,
H1N1 HA NA,
SARS2 and
SARS1
+ results on vaccine effectiveness (IEDB, maybe BCELL interaction)
Escape-resistant Vaccine 
Collaboration with Aaron Esser-kahn
Milestones
Notes
+ wait for experiments
Cognitive Dissonance
Milestones
Notes
+ prepare qnet dataframes from second dataset
+ run qnet
+ show dynamics of analysis
+ investigate perturbation results on q-sampling
Universal Communication 
Milestones
Notes
+ update draft
Data Smashing 2.0
Milestones
Notes
+ update abstract and introduction
+ update challenge dataset
+ update challenge dataset
Fraction Nets
Milestones
Notes
+ results table update with cynet ROC and prc/recall curves
+ add figure to show advantages in parsimony, decay behaviors with distance isn different problems, partial update capability
Time Smash
Milestones
Notes
+ draft update
+ flow chart showing components, capabilities and algorithms. e.g. we have a distance calculator, lustering and classification tools, and a quatizer.
+ show plot how our diatnce calculation is different from conventional distance calculation (take stochastic processes, and show distance calculated as the mean square error, and lsmash)
+ have a plot to show how quantization is being carried out on a couple of examples. Show how we can prune, detrend, and use multiple alphabet
+ Update the repo with detailed README with fully worked out example
Urban Crime
Milestones
Notes
+ finish cities
+ produce RESULT_A and RESULT_B tables (synced with census data)
+ perturbation data add
Infant Microbiome
Collaboration with Erika Claud
Milestones
Notes
+ prepare qnet dataframes
+ run qnet
+ Find dependency to outcome vraiables
+ investigate perturbation results on q-sampling