8-9-2020

Sep 8-9-2020

Yi

  + Address nncomput comments
  + Complete time smash
  + time smash: how to handle unequal time series
  + time smash: specify the data format 

Jin

  + status of creed. 
  + Generate qnet without dropping varaibles
  + Collaborate with Weeraprat to help him compute distance matrices for influenza

Dmytro

  + IPF: Publisher Files ready, TODO: write up the description of files, since many changed due to different pipeline, post writeup to wiki
  + MANIC: Generate publisher results for two modes: 
  -- Given Unipolar Depressive, Predict Bipolar/Manic
  -- Given Bipolar, Predict Manic Switch
  + ED: Resluts' Quality needs a bit more scrutiny, will report on that soon (AUC lower for high-risk cohort, but TPR@95FPR seems to be good)
  + First Steps of Disease Spectrum Foresight Project presented: https://docs.google.com/presentation/d/1gt-o28lyU-R8p3Z6BcQsl8PER1g4dbA3-cpcWyZzubk/edit?usp=sharing

Victor

  + time smash improvement

Kelly

  + any mubiome updates

Alice

 NA

David

  +   [https://harris.uchicago.edu/faculty-research/nlsy97-flat-files](https://harris.uchicago.edu/faculty-research/nlsy97-flat-files) data setup
  +   read the creed draft

Lyn

  +   read Qnet formalism https://medrxiv.org/content/10.1101/2020.07.17.20156364v3 
  +   Mubiome analysis https://github.com/zeroknowledgediscovery/infbiome_
  +   http://34.66.189.202:4567/project/Infant%20Microbiome%20Modeling.md

Weerapat

  + compute network chracterization for all strains over years, and see if we can relate  network property to rare events